PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036253.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 235aa    MW: 25387.4 Da    PI: 8.4985
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036253.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.32e-27191061100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk            +lpe++r da++slvyeA+ r+rdPvyG++g+i++lqqq+++
  HL.SW.v1.0.G036253.1  19 PCAACKLLRRRCAEECPFSPYFSPQEPQKFAAVHK------------ELPESQRADAANSLVYEANLRLRDPVYGCMGLISALQQQIQT 95 
                           7********************************96............99**************************************** PP

                DUF260  90 lkaelallkee 100
                           l+ael+++++e
  HL.SW.v1.0.G036253.1  96 LQAELNAVRTE 106
                           ******99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.47218107IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-2619104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRRVQSFGP PGTLNTITPC AACKLLRRRC AEECPFSPYF SPQEPQKFAA VHKELPESQR  60
ADAANSLVYE ANLRLRDPVY GCMGLISALQ QQIQTLQAEL NAVRTEILRY KFREATTNSH  120
NHHIVSSTNT STSTTTTHQA ALANLMSPHH HHNHNNIHQA VVSIASLPSQ LAISHSTLSP  180
GPPHRLPPPS PPPPPPSIVV SASSTTSSST SSLYTSTNTT GYSSISSDNV PYFD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874603.15e-75PREDICTED: LOB domain-containing protein 13
SwissprotQ9AT612e-60LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A068U7A71e-68A0A068U7A7_COFCA; Uncharacterized protein
TrEMBLB9S4B82e-68B9S4B8_RICCO; LOB domain-containing protein, putative
STRINGGLYMA06G15050.11e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22983486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.12e-60LOB domain-containing protein 13